The Untitled
Without haste, but without rest. Johann Wolfgang von Goethe
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Summary

  Personal Information

Name  :  Yuichi Aoki

Affiliation  :   Department of Applied Information Sciences, Graduate School of Information Sciences, Tohoku University, Japan   

Position  :  Post-doctral Researcher

Date of Birth  :  1985/10/13

Nationality  :  Japan

  Research

Fields  :  Plant Physiology, Plant Molecular Biology, Genome Science, Bioinfomatics

Keywords  :  Transcriptional Regulation, Gene Coexpression, Isoprenoid Metabolism, Lipid Metabolism, Microalgae, Chlamydomonas reinhardtii, Hevea brasiliensis

Academic Society Memberships  :

  • The Molecular Biology Society of Japan  
  • The Japanese Society of Plant Physiologists  
  • Japanese Society for Plant Cell and Molecular Biology  
  • Japanese Society for Bioinformatics  
  • The Japanese Society for Artificial Intelligence  

  Qualifications

  • Pass the Certification Examination of Bioinformatics Engineers (2012-)  
  • Project Management Coordinator (2011-)  

  Contact

E-mail (Official)  :  aoki (at) sb.ecei.tohoku.ac.jp

E-mail (Personal)  :  aoyu1013 (at) gmail.com

History

  Education

Year Institution Academic Degree
2011-2014 Department of Applied Chemistry, Chemical Engineering and Biomolecular Engineering, Tohoku University, Japan Ph.D.
2009-2011 Department of Applied Chemistry, Chemical Engineering and Biomolecular Engineering, Tohoku University, Japan Master of Engineering
2005-2009 Department of Applied Chemistry, Chemical Engineering and Biomolecular Engineering, Tohoku University, Japan Bachelor of Engineering

  Work Experience

Year Affiliation Position
2014-Present Department of Applied Information Sciences, Graduate School of Information Sciences, Tohoku University, Japan Post-doctral Researcher
2012-2014 Department of Applied Information Sciences, Graduate School of Information Sciences, Tohoku University, Japan Research Assistant

  Teaching Experience

Year Sumamry
2014 Teach molecular biology and bioinformatics tequniques to high school students in the "Exploring-Germination-and-Growth Program for Young Scientists (EGGS)".
2009-2011 Teach molecular biology tequniques to undergraduate students in the "Chemical and Biomolecular Engineering Experiment Classes".
Research Fields
In Preparation
Databases 2
  • Gene Coexpression Database for Microalgal Species    ALCOdb    »»»    Icon of ALCOdb
  • Gene Coexpression Database for Cyanobacteria    ALCOdbCyano    »»»    Icon of ALCOdbCyano
Publications 5

  Original Papers 4

  1. Yasunobu Okamura*, Yuichi Aoki* (*Co-First), Takeshi Obayashi*, Shu Tadaka, Satoshi Ito, Takahumi Narise, Kengo Kioshita    COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.    Nucleic Acids Research, 43, D82-6 (2015)   
  2. Yuichi Aoki, Seiji Takahashi, Satoshi Toda, Tanetoshi Koyama and Toru Nakayama    Transcriptional responses of laticifer-specific genes to phytohormones in a suspension-cultured cell line derived from petioles of Hevea brasiliensis.    Plant Biotechnology, 31(5), 593-598 (2014)   
  3. Yuichi Aoki, Seiji Takahashi, Daisuke Takayama et al.    Identification of laticifer-specific genes and their promoter regions from a natural rubber producing plant Hevea brasiliensis.    Plant Science, 225, 1-8 (2014)   
  4. Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Yuichi Aoki, Matsuyuki Shirota and Kengo Kinoshita    ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.    Plant and Cell Physiology, 55(1), e6 (2014)   

  Doctoral Dissertation 1

  • Yuichi Aoki    パラゴムノキの天然ゴム生合成機構に関する研究 (A Study on Biosynthetic Mechanism of Natural Rubber in Hevea brasiliensis)   
Presentations 15

  Oral 8

  1. Yuichi Aoki, Yasunobu Okamura, Takeshi Obayashi, Kengo Kinoshita    Construction of Gene Coexpression Database for Microalgal Species    The 56th Annual Meeting of The Japanese Society of Plant Physiologists    (Tokyo University of Agriculture, March 16-18, 2015)   
  2. 青木 裕一, 大林 武, 木下 賢吾    ゲノム配列に基づく共発現遺伝子ペアの推定    第6回 生命情報科学若手の会・研究会    (RIKEN Center for Developmental Biology, October 29-30, 2014)   
  3. Yuichi Aoki, Satoshi Ito, Yasunobu Okamura, Shu Tadaka, Takeshi Obayashi, Kengo Kinoshita    Genome-based prediction of gene coexpression network in Arabidopsis thaliana (Lightning Talk)    Joint Conference on Informatics in Biology, Medicine and Pharmacology 2014    (Sendai International Center, October 2-4, 2014)   
  4. 青木 裕一, 高橋 征司, 大林 武, 中山 亨    パラゴムノキのRubber Elongation Factorの転写制御機構の解析    第32回 日本植物細胞分子生物学会（盛岡）大会・シンポジウム    (Aiina Iwate, August 21-22, 2014)   
  5. 青木 裕一, 高橋 征司, 解良 康太, 村瀬 雅彦, 須藤 剛, 李 惠眞, 寺内 大樹, 鈴木 一樹, 沓川 諒, 古山 種俊, 中山 亨    高等植物のシス型プレニルトランスフェラーゼの包括的機能解析    第23回 イソプレノイド研究会・例会    (The University of Tokyo, September 14, 2013)   
  6. 青木 裕一, 鈴木 一樹, 高橋 征司, 中山 亨    パラゴムノキのシス型プレニル鎖延長酵素群の機能解析    第31回 日本植物細胞分子生物学会（札幌）大会・シンポジウム    (Hokkaido University, September 10-12, 2013)   
  7. 青木 裕一, 高橋 征司, 戸田 哲史, 佐野 亮輔, 鈴木 秀幸, 柴田 大輔, 古山 種俊, 中山 亨    アグロバクテリウムを用いたパラゴムノキ培養細胞の形質転換    第30回 日本植物細胞分子生物学会（生駒）大会・シンポジウム    (Nara Institute of Science and Technology, August 3-5, 2012)   
  8. 青木 裕一, 高橋 征司, 高山 大輔, 尾形 善之, 櫻井 望, 鈴木 秀幸, 柴田 大輔, 古山 種俊, 中山 亨    天然ゴム高生産にむけたパラゴムノキラテックス特異的高発現遺伝子群のプロモーター解析    第28回 日本植物細胞分子生物学会（仙台）大会・シンポジウム    (Tohoku University, September 2-3, 2010)   

  Poster 7

  1. Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita    Relationship Analysis between Nucleosome Positioning Dynamics and Gene Coexpression    BMB2015 (The 38th Annual Meeting of the Molecular Biology Society of Japan)    (Kobe Port Island, December 1-4, 2015)   
  2. 青木 裕一, 大林 武, 木下 賢吾    藍藻の遺伝子共発現データベース構築の現状と課題    藍藻の分子生物学2015    (Kazusa Akademia Center, November 16-17, 2015)   
  3. Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita    Relationship Analysis between 3D Genome Architecture and Gene Coexpression    Joint Conference on Informatics in Biology, Medicine and Pharmacology 2015    (Uji Obaku Plaza, October 29-31, 2015)   
  4. 青木 裕一, 大林 武, 木下 賢吾    ALCOdbを用いたクラミドモナスの遺伝子共発現解析    第12回 クラミドモナス研究会    (Chuo University, September 3-4, 2015)   
  5. 青木 裕一, 大林 武, 木下 賢吾    微細藻類の遺伝子共発現データベースALCOdbの構築と光合成研究への応用    第6回 日本光合成学会年会    (Okayama International Center, May 22-23, 2015)   
  6. Yuichi Aoki, Satoshi Ito, Yasunobu Okamura, Shu Tadaka, Takeshi Obayashi, Kengo Kinoshita    Exploring genomic features associated with the gene coexpression in Arabidopsis thaliana    The 37th Annual Meeting of the Molecular Biology Society of Japan    (Pacifico Yokohama, November 25-27, 2014)   
  7. Yuichi Aoki, Satoshi Ito, Yasunobu Okamura, Shu Tadaka, Takeshi Obayashi, Kengo Kinoshita    Genome-based prediction of gene coexpression network in Arabidopsis thaliana    Joint Conference on Informatics in Biology, Medicine and Pharmacology 2014    (Sendai International Center, October 2-4, 2014)   
  8. Yuichi Aoki, Kazuki Suzuki, Seiji Takahashi, Toru Nakayama    Cloning and characterization of cis-prenyltransferase gene family in Hevea brasiliensis    The 55th Annual Meeting of The Japanese Society of Plant Physiologists    (University of Toyama, March 18-20, 2014)   
  9. 青木 裕一, 高橋 征司, 中山 亨    遺伝子工学的手法を用いた天然ゴム高生産系の構築    生物工学若手研究者の集い 夏のセミナー 2012    (Montana Resort, June 30 - July 1, 2012)   
  10. Yuichi Aoki, Seiji Takahashi, Toru Nakayama    Identification and promoter analysis of latex specific genes from a natural rubber producing plant, Hevea brasiliensis    5th International Symposium on Chemical-Environmental-Biomedical Technology for Young Researchers    (Tohoku University, September 5-8, 2010)   
  11. Yuichi Aoki, Seiji Takahashi, Toru Nakayama    Identification of latex specific genes in a natural rubber producing plant, Hevea brasiliensis    21st International Conference on Arabidopsis Research    (Pacifico Yokohama, June 6-10, 2010)   
  12. Yuichi Aoki, Seiji Takahashi, Daisuke Takayama, Hideyuki Suzuki, Daisuke Shibata, Tanetoshi Koyama, Toru Nakayama    Promoter analysis of latex-specific genes in Hevea brasiliensis    9th International Meeting: Biosynthesis and Function of Isoprenoids in Plants, Microorganisms and Parasites    (The University of Tokyo, May 25-29, 2009)   
Awards 1
  1. 青木 裕一, 高橋 征司, 中山 亨    遺伝子工学的手法を用いた天然ゴム高生産系の構築    生物工学若手研究者の集い 2012 ポスター賞    (Montana Resort, June 30 - July 1, 2012)